筑波大学 特別経費プロジェクト 「生命の樹」研究機能の充実 -多様な非モデル生物研究に基づく生命原理の再構築-

発表論文

プレスリリースされた研究

 

【2017】

Yoshiaki Morino, Naoki Hashimoto, Hiroshi Wada (2017)
Expansion of TALE homeobox genes and the evolution of spiralian development
Nature Ecology & Evolution doi:10.1038/s41559-017-0351-z

Li Y*, Zhao D*,  Horie T*, Chen G*, Bao H, Chen S, Liu W, Horie R, Liang T, Dong B, Feng Q, Tao Q, Liu X (2017) Conserved gene regulatory module specifies lateral neural borders across bilaterians.
Proc Natl Acad Sci U S A 114:E6352-6360 * equal contribution

Ichinose N, Yada T and Wada H (2017) Estimating Optimal Sparseness of Developmental Gene Networks Using a Semi-quantitative Model
Plos One12, e0176492

Hirakawa Y, Nakayama T, Keilert N, Ishida K (2017) Evolution of UhpC-type hexose-phosphate transporters in dinoflagellates.
Phycological Research 65(2):166-170.

Morita R, Takaine M, Numata O, Nakano K (2017) Molecular dissection of the actin-binding ability of the fission yeast α-actinin, Ain1, in vitro and in vivo. J Biochem 162(2):93-102.

Kinesin-14 is Important for Chromosome Segregation During Mitosis and Meiosis in the Ciliate Tetrahymena thermophila (2017) Kushida Y, Takaine M, Nakano K, Sugai T, Vasudevan KK, Guha M, Jiang YY, Gaertig J, Numata O (2017) J Eukaryot Microbiol 64(3):293-307.

Ogura Y, Sasakura Y (2017) Emerging mechanisms regulating mitotic synchrony during animal embryogenesis.
Dev Growth Differ Epub ahead of print

Osugi T, Sasakura Y, Satake H (2017) The nervous system of the adult ascidian Ciona intestinalis Type A (Ciona robusta): Insights from transgenic animal models.
PLoS One 26;12(6):e0180227.

Sasakura Y, Yoshida K, Treen N (2017) Genome Editing of the Ascidian Ciona intestinalis with TALE Nuclease.
Methods Mol Biol 1630:235-245

Yoshida K, Nakahata A, Treen N, Sakuma T, Yamamoto T, Sasakura Y (2017)Hox-mediated endodermal identity patterns pharyngeal muscle formation in the chordate pharynx.
Development 144(9):1629-1634.

Yoshida K, Hozumi A, Treen N, Sakuma T, Yamamoto T, Shirae-Kurabayashi M, Sasakura Y (2017)Germ cell regeneration-mediated, enhanced mutagenesis in the ascidian Ciona intestinalis reveals flexible germ cell formation from different somatic cells.
Dev Biol 423(2):111-125

Kudo Y, Chiba C, Konoki K, Cho Y, Yotsu-Yamashita M (2017) Dietary administration of tetrodotoxin and its putative biosynthetic intermediates to the captive-reared non-toxic Japanese fire-bellied newt, Cynops pyrrhogaster.
Toxicon 137: 78-82

Yasumuro H, Sakurai K, Toyama F, Maruo F. and Chiba C (2017) Implications of a multi-step trigger of retinal regeneration in the adult newt.
Biomedicines 5.2: 25.

Kubohara Y, Kikuchi H, Nguyen VH, Kuwayama H, and Oshima Y (2017)
Evidence that differentiation-inducing factor-1 controls chemotaxis and cell differentiation, at least in part, via mitochondria in Dictyostelium discoideum.
Biology Open 6, 741-751

R. Harada, Y. Shigeta (2017) Temperature-Exchanged Parallel Cascade Selection Molecular Dynamics Accelerates Structural Transitions of Proteins. Journal of Computational Chemistry accepted

R. Harada, Y. Shigeta (2017) An Assessment of Optimal Time Scale of Conformational Resampling in Parallel Cascade Molecular Dynamics. Molecular Simulation accepted

R. Harada, Y. Shigeta (2017) Dynamic Specification of Initial Structures in Parallel Cascade Selection Molecular Dynamics (PaCS-MD) Efficiently Promotes Biologically Relevant Rare Events. Bulletin of the Chemical Society of Japan. accepted

Y. Shigeta, R. Harada, R. Sato, H. Kitoh-Nishioka, T. K. M. Bui, A. Sato, A. Kyan, Y. Ishii, M. Kimatsuka, S. Yamasaki, M. Kayanuma, M. Shoji (2017) Classical Cumulant Dynamics for Statistical Chemical Physics. Molecular Simulation accepted

R. Harada, Y. Shigeta (2017) Structural Dissimilarity Sampling with Dynamically Self-Guiding Selection Journal of Computational Chemistry 38, 1921-1929.

Y. Ujiie, W. Tanaka, K. Hanaoka, R. Harada, M. Kayanuma, M. Shoji, T. Murakawa, T. Ishida, Y. Shigeta, H. Hayashi (2017) Molecular Mechanism of the Reaction Specificity in Threonine Synthase: Importance of the Substrate Conformations. Journal of Physical Chemistry B 121, 5536-5543.

J. Fujita, R. Harada, Y. Maeda, Y. Saito, E. Mizohata, T. Inoue, Y. Shigeta, H. Matsumura (2017)  Identification of the key interactions in structural transition pathway of FtsZ from Staphylococcus aureus. Journal of Structural Biology 198, 65-73.

R. Harada, Y. Shigeta (2017) How does the number of initial structures affect the conformational sampling efficiency and quality in Parallel Cascade Selection Molecular Dynamics (PaCS-MD)? Chemistry Letters 46, 862-865.

R. Harada, Y. Shigeta (2017) Efficient conformational search based on Structural Dissimilarity Sampling: Applications to reproductions of structural transitions on Maltodextrin Binding Protein. Journal of Chemical Theory and Computation 13, 1411-1423.

R. Harada, Y. Takano, Y. Shigeta (2017) Common folding processes of mini proteins: Partial formations of secondary structures initiate the immediate protein folding. Journal of Computational Chemistry 38 790-797.

M. Shoji, H. Isobe, T. Nakajima, Y. Shigeta, M. Suga, F. Akita, J.-R. Shen, K. Yamaguchi (2017) Large-scale QM/MM calculations of the CaMn4O5 cluster in the S3 state of the oxygen evolving complex of photosystem II. Comparison between water-inserted and no water-inserted structures. Faraday Discussions 198, 83-106.

Kakui K, Suzuki A, Nakano H, Kohtsuka H (2017) Habitat of a tanaidacean Apseudes nipponicus Shiino, 1937. Bull. Kitakyushu Mus. Nat. Hist. Hum. Hist., Ser. A 15: 1-3

Imura E, Yoshinari Y, Niwa YS, Niwa R (2017) Protocols for Visualizing Steroidogenic Organs and Their Interactive Organs with Immunostaining in the Fruit Fly Drosophila melanogaster. Journal of Visualized Experiments in press

Leger MM, Kolisko M, Kamikawa R, Stairs CW, Kume K, Cepicka I, Silberman JD, Andersson JO, Xu F, Yabuki A, Takishita K, Inagaki Y, Simpson AGB, Hashimoto T, Roger AJ (2017) Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.  Nature Ecology & Evolution 1:0092

Yazaki Y, Ishikawa SA, Kume K, Kumagai A, Kamaishi T, Tanifuji G, Hashimoto T, Inagaki Y (2017) Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including parasitic species for better understanding transitions from a free-living to a parasitic lifestyle. Genes & Genetic Systems in press

Tsuruta F, Okajima T, Yano S, Chiba T (2017) Quantification of Endosome and Lysosome Motilities in Cultured Neurons Using Fluorescent Probes. J Vis Exp May 22;(123). doi: 10.3791/55488.

Hirakawa Y. Nakayama T, Keilert N, Ishida K (2017) Evolution of UhpC-type hexose-phosphate transporters in dinoflagellates. Phycol. Res. 65:166-170

Ameku T, Yoshinari Y, Fukuda R, Niwa R (2017) Ovarian ecdysteroid biosynthesis and female germline stem cells. Fly doi: 10.1080/19336934.2017.1291472

Fukuda T, Kigoshi-Tansho Y, Naganuma T, Kazaana A, Okajima T, Tsuruta F, Chiba T (2017) CACUL1/CAC1 attenuates p53 activity through PML post-translational modification. Biochem Biophys Res Commun 482(4):863-869

 

【過去の発表論文】

発表論文(2016)

発表論文(2015)

発表論文(2014)